Project Outcomes - Year 1
Year 1: Period 1
Projects completed in Year 1. Addressing requests recieved during the first half of Year 1 See: Proposals Received
Includes data releases: Y1: 1078
SSG Rank | Task | Outcome |
---|---|---|
1.6 | Axon extension of functionally recorded cells | Added 103 cells |
2.0 | Proofread ‘cleaning’ of astrocytes | Added 12 cells |
2.6 | Vasculature Analysis support | New public resource |
3.4 | Annotation of parvalbumin interneurons | 53517 spine annotations 73237 myelin annotations |
4.6 | Axon extension of putative Chodl cells | Incomplete in Y1 |
Axon extension of functionally recorded cells
Proofreading and extending functionally coregistered pyramidal cells, which were a combination of excitatory cell types in different superficial layers.
Queried from CAVE table: proofreading_status_and_strategy
:
# Standard query
'proofreading_status_and_strategy')
client.materialize.query_table(
# Content-aware query
='t').query() client.materialize.tables.proofreading_status_and_strategy(status_axon
Proofread ‘cleaning’ of astrocytes
Selecting quality astrocytes within the V1 Column, and clean to remove false-merges: 12 astrocytes, 7 cleaned
CAVE table: vortex_astrocyte_proofreading_status
# Standard query
'vortex_astrocyte_proofreading_status')
client.materialize.query_table(
# Content-aware query
='clean').query() client.materialize.tables.vortex_astrocyte_proofreading_status(status
For a coding example of how to render these astrocytes, see: Analysis Gallery: Astrocyte Meshes
Annotation of parvalbumin interneurons
Manual annotation of spine and shaft synaptic targets of basket cells: 53517 annotations
Queried from CAVE table: vortex_compartment_targets
# Standard query
'vortex_compartment_targets', limit=10)
client.materialize.query_table(
# Content-aware query
=example_root_id).query() client.materialize.tables.vortex_compartment_targets(pre_pt_root_id
Manual annotation of myelination and nodes of Ranvier along basket cell axons: 73237 annotations
CAVE table: vortex_manual_myelination_v0
# Standard query
'vortex_manual_myelination_v0', limit=10)
client.materialize.query_table(
# Content-aware query
=example_root_id).query() client.materialize.tables.vortex_manual_myelination_v0(valid_id
CAVE table: vortex_manual_nodes_of_ranvier
# Standard query
'vortex_manual_nodes_of_ranvier')
client.materialize.query_table(
# Content-aware query
=example_root_id).query() client.materialize.tables.vortex_manual_nodes_of_ranvier(valid_id
For a coding example of how to render this cell with its myelin, see: Analysis Gallery: Myelin Labels